Skip to main content

ScholarsBetaWeill Cornell Medicine

Browse About Sign in

Loading co-authored publications…

Scholars @ Weill Cornell Medicine

Help & supportPhase 1 prototype

Scholars/Brad Jones, PhD/Co-authored with mentees

Co-authored publications with mentees

Brad Jones, PhD · 32 publications across 11 mentees

PhD mentee

Dynamic Antigen Expression and Intrinsic CTL Resistance in HIV Reservoir Clones.
bioRxiv : the preprint server for biology · 2026
BJBrad JonesNLNoemi LindenIFIsabella FerreiraAHAlberto HerreraNBNathan Board+7 more →
PMID: 41809016PMCID: PMC12970335DOI
With Noemi Linden · Immunology & Microbial Pathogenesis (PhD)
Dynamic Antigen Expression and Intrinsic CTL Resistance in HIV Reservoir Clones.
bioRxiv : the preprint server for biology · 2026
BJBrad JonesAHAlberto HerreraIFIsabella Ferreira NBNathan BoardNLNoemi Linden+7 more →
PMID: 41809016PMCID: PMC12970335DOI
With Alberto Herrera · Immunology & Microbial Pathogenesis (PhD)
Dynamic Antigen Expression and Intrinsic CTL Resistance in HIV Reservoir Clones.
bioRxiv : the preprint server for biology · 2026
BJBrad JonesCOCristian OviesIFIsabella FerreiraAHAlberto HerreraNBNathan Board+7 more →
PMID: 41809016PMCID: PMC12970335DOI
With Cristian Ovies · MD-PhD WGS Immunology & Microbial Pathogenesis (PhD)
Dynamic Antigen Expression and Intrinsic CTL Resistance in HIV Reservoir Clones.
bioRxiv : the preprint server for biology · 2026
BJBrad JonesSVShane VedovaIFIsabella FerreiraAHAlberto HerreraNBNathan Board+7 more →
PMID: 41809016PMCID: PMC12970335DOI
With Shane Vedova · Immunology & Microbial Pathogenesis (PhD)
Autologous neutralizing antibodies and polyfunctional T cells contribute to long-term HIV-1 post-intervention control.
Nature immunology · 2026
BJBrad JonesIMItzayana MillerADAli Danesh MCMarina CaskeyMCMichel C Nussenzweig
PMID: 41776101PMCID: PMC13043296DOI2 citations
With Itzayana Miller · Immunology & Microbial Pathogenesis (PhD)
Atorvastatin suppresses HIV/antiretroviral drug-induced cardiac fibrosis and dysfunction in mice by blocking platelet TGF-β1 signaling.
JCI insight · 2026
BJBrad JonesIMItzayana MillerADAli Danesh JCJeffrey C Laurence
PMID: 41774493PMCID: PMC13460851DOI
With Itzayana Miller · Immunology & Microbial Pathogenesis (PhD)
Dynamic antigen expression and cytotoxic T cell resistance in HIV reservoir clones.
Nature · 2026
BJBrad JonesNLNoemi LindenIFIsabella FerreiraAHAlberto HerreraCOCristian Ovies+14 more →
PMID: 41735521PMCID: PMC13190302DOI3 citations
With Noemi Linden · Immunology & Microbial Pathogenesis (PhD)
Dynamic antigen expression and cytotoxic T cell resistance in HIV reservoir clones.
Nature · 2026
BJBrad JonesAHAlberto HerreraIFIsabella FerreiraNLNoemi LindenCOCristian Ovies+14 more →
PMID: 41735521PMCID: PMC13190302DOI3 citations
With Alberto Herrera · Immunology & Microbial Pathogenesis (PhD)
Dynamic antigen expression and cytotoxic T cell resistance in HIV reservoir clones.
Nature · 2026
BJBrad JonesIMItzayana MillerIFIsabella FerreiraAHAlberto HerreraNLNoemi Linden+14 more →
PMID: 41735521PMCID: PMC13190302DOI3 citations
With Itzayana Miller · Immunology & Microbial Pathogenesis (PhD)
Dynamic antigen expression and cytotoxic T cell resistance in HIV reservoir clones.
Nature · 2026
BJBrad JonesCOCristian OviesIFIsabella FerreiraAHAlberto HerreraNLNoemi Linden+14 more →
PMID: 41735521PMCID: PMC13190302DOI3 citations
With Cristian Ovies · MD-PhD WGS Immunology & Microbial Pathogenesis (PhD)
Dynamic antigen expression and cytotoxic T cell resistance in HIV reservoir clones.
Nature · 2026
BJBrad JonesSVShane VedovaIFIsabella FerreiraAHAlberto HerreraNLNoemi Linden+14 more →
PMID: 41735521PMCID: PMC13190302DOI3 citations
With Shane Vedova · Immunology & Microbial Pathogenesis (PhD)
Q4ddPCR: a flexible, 4-target assay for high-resolution HIV reservoir profiling.
Nature communications · 2026
BJBrad JonesGGGregory GladkovLNLouise Noelie Josephine Leyre
PMID: 41720775PMCID: PMC13035820DOI2 citations
With Gregory Gladkov · Immunology & Microbial Pathogenesis (PhD)
Development and validation of HIV SMRTcap for the characterization of HIV-1 reservoirs across tissues and subtypes.
PLoS pathogens · 2026
BJBrad JonesNLNoemi LindenADAli Danesh GQGuinevere Q. Lee
PMID: 41529060PMCID: PMC12851485DOI2 citations
With Noemi Linden · Immunology & Microbial Pathogenesis (PhD)
HIV-1 Integration Site Determines the Transcriptional Fate and Persistence of Integrated Proviruses.
bioRxiv : the preprint server for biology · 2026
BJBrad JonesIMItzayana MillerADAli Danesh GQGuinevere Q. Lee
PMID: 41509258PMCID: PMC12776120DOI
With Itzayana Miller · Immunology & Microbial Pathogenesis (PhD)
HIV Nef amplifies mechanical heterogeneity to promote immune evasion.
bioRxiv : the preprint server for biology · 2025
BJBrad JonesAHAlberto HerreraLNLouise Noelie Josephine LeyreELEsther LeePZPaul Zumbo+3 more →
PMID: 41509268PMCID: PMC12776059DOI
With Alberto Herrera · Immunology & Microbial Pathogenesis (PhD)
HIV Nef amplifies mechanical heterogeneity to promote immune evasion.
bioRxiv : the preprint server for biology · 2025
BJBrad JonesCSConnor SmithLNLouise Noelie Josephine LeyreAHAlberto HerreraELEsther Lee+3 more →
PMID: 41509268PMCID: PMC12776059DOI
With Connor Smith · Immunology & Microbial Pathogenesis (PhD)
Transcription of HIV-1 is heterogenous among authentic latent CD4+ T cell clones.
The Journal of experimental medicine · 2025
BJBrad JonesNLNoemi LindenIFIsabella Ferreira MCMarina CaskeyMCMichel C Nussenzweig
PMID: 41474972PMCID: PMC13335129DOI4 citations
With Noemi Linden · Immunology & Microbial Pathogenesis (PhD)
Transcriptional signature of induced neurons differentiates virologically suppressed people with HIV from people without HIV.
JCI insight · 2025
BJBrad JonesAHAlberto HerreraPNPhilipp N OstermannSMSamuel Martínez-Meza+2 more →THTeresa Hope Evering
PMID: 41324907PMCID: PMC12892921DOI
With Alberto Herrera · Immunology & Microbial Pathogenesis (PhD)
Q4ddPCR (May the Fourth Be Precise): A Flexible, 4-Target Assay for High-Resolution HIV Reservoir Profiling.
bioRxiv : the preprint server for biology · 2025
BJBrad JonesGGGregory Gladkov
PMID: 40766570PMCID: PMC12324304DOI
With Gregory Gladkov · Immunology & Microbial Pathogenesis (PhD)
Development and validation of HIV SMRTcap for the characterization of HIV-1 reservoirs across tissues and subtypes.
bioRxiv : the preprint server for biology · 2025
BJBrad JonesNLNoemi LindenADAli Danesh GQGuinevere Q. Lee
PMID: 40654951PMCID: PMC12248038DOI
With Noemi Linden · Immunology & Microbial Pathogenesis (PhD)
Correction: Transcription of HIV-1 at sites of intact latent provirus integration.
The Journal of experimental medicine · 2025
BJBrad JonesNLNoemi LindenIFIsabella Ferreira
PMID: 40408268PMCID: PMC12101529DOI
With Noemi Linden · Immunology & Microbial Pathogenesis (PhD)
EZH2 inhibition mitigates HIV immune evasion, reduces reservoir formation, and promotes skewing of CD8⁺ T cells toward less-exhausted phenotypes.
Cell reports · 2025
BJBrad JonesNLNoemi LindenAGAndrea GramaticaIMItzayana MillerPZPaul Zumbo+7 more →
PMID: 40333189PMCID: PMC13088201DOI13 citations
With Noemi Linden · Immunology & Microbial Pathogenesis (PhD)
EZH2 inhibition mitigates HIV immune evasion, reduces reservoir formation, and promotes skewing of CD8⁺ T cells toward less-exhausted phenotypes.
Cell reports · 2025
BJBrad JonesIMItzayana MillerAGAndrea Gramatica PZPaul Zumbo LNLouise Noelie Josephine Leyre+7 more →
PMID: 40333189PMCID: PMC13088201DOI13 citations
With Itzayana Miller · Immunology & Microbial Pathogenesis (PhD)
A Participant-Derived Xenograft Mouse Model to Decode Autologous Mechanisms of HIV Control and Evaluate Immunotherapies.
Bio-protocol · 2025
BJBrad JonesIMItzayana MillerADAli Danesh
PMID: 40224654PMCID: PMC11986693DOI2 citations
With Itzayana Miller · Immunology & Microbial Pathogenesis (PhD)
Multi-Omic Atlas reveals cytotoxic phenotype and ROS-linked metabolic quiescence as key features of CTL-resistant HIV-infected CD4 ⁺ T-cells.
bioRxiv : the preprint server for biology · 2024
BJBrad JonesNLNoemi LindenAHAlberto HerreraLNLouise Noelie Josephine Leyre DBDoron Betel
PMID: 39763858PMCID: PMC11702756DOI
With Noemi Linden · Immunology & Microbial Pathogenesis (PhD)
Multi-Omic Atlas reveals cytotoxic phenotype and ROS-linked metabolic quiescence as key features of CTL-resistant HIV-infected CD4 ⁺ T-cells.
bioRxiv : the preprint server for biology · 2024
BJBrad JonesAHAlberto HerreraLNLouise Noelie Josephine LeyreNLNoemi LindenDBDoron Betel
PMID: 39763858PMCID: PMC11702756DOI
With Alberto Herrera · Immunology & Microbial Pathogenesis (PhD)
A Transcriptional Signature of Induced Neurons Differentiates Virologically Suppressed People Living With HIV from People Without HIV.
bioRxiv : the preprint server for biology · 2024
SMSamuel Martínez-MezaDNDouglas Nixon
PMID: 39484396PMCID: PMC11526917DOI
With Alberto Herrera · Immunology & Microbial Pathogenesis (PhD)
Transcription of HIV-1 at sites of intact latent provirus integration.
The Journal of experimental medicine · 2024
BJBrad JonesNLNoemi LindenIFIsabella Ferreira MCMarina CaskeyMCMichel C Nussenzweig
PMID: 39141127PMCID: PMC11323366DOI14 citations
With Noemi Linden · Immunology & Microbial Pathogenesis (PhD)
Transcription of HIV-1 at sites of intact latent provirus integration.
bioRxiv : the preprint server for biology · 2024
BJBrad JonesNLNoemi LindenIFIsabella FerreiraMCMichel C Nussenzweig
PMID: 38746186PMCID: PMC11092494DOI
With Noemi Linden · Immunology & Microbial Pathogenesis (PhD)
Whack-a-virus: HIV-specific T cells play an exhausting game.
Cell host & microbe · 2023
BJBrad JonesAHAlberto Herrera
PMID: 37708850PMCID: PMC11070188DOI1 citations
With Alberto Herrera · Immunology & Microbial Pathogenesis (PhD)
Impact of a TLR9 agonist and broadly neutralizing antibodies on HIV-1 persistence: the randomized phase 2a TITAN trial.
Nature medicine · 2023
BJBrad JonesNLNoemi LindenMCMichel C Nussenzweig
PMID: 37696935PMCID: PMC10579101DOI75 citations
With Noemi Linden · Immunology & Microbial Pathogenesis (PhD)
The latency-reversing agent HODHBt synergizes with IL-15 to enhance cytotoxic function of HIV-specific T cells.
JCI insight · 2023
BJBrad JonesNLNoemi LindenAPAlina Ps PangMJMichael J CorleyFDFriederike Dündar+1 more →
PMID: 37581929PMCID: PMC10561764DOI11 citations
With Noemi Linden · Immunology & Microbial Pathogenesis (PhD)
Potential multi-modal effects of provirus integration on HIV-1 persistence: lessons from other viruses.
Trends in immunology · 2022
BJBrad JonesNLNoemi Linden
PMID: 35817699PMCID: PMC9429957DOI13 citations
With Noemi Linden · Immunology & Microbial Pathogenesis (PhD)
Integrated Assessment of Viral Transcription, Antigen Presentation, and CD8⁺ T Cell Function Reveals Multiple Limitations of Class I-Selective Histone Deacetylase Inhibitors during HIV-1 Latency Reversal.
Journal of virology · 2020
BJBrad JonesCDChase D McCannTMTalia M MotaADAli DaneshYRYanqin Ren+1 more →
PMID: 32051267PMCID: PMC7163115DOI23 citations
With Chase McCann · Immunology & Microbial Pathogenesis (PhD) · Class of 2020
BCL-2 antagonism sensitizes cytotoxic T cell-resistant HIV reservoirs to elimination ex vivo.
The Journal of clinical investigation · 2020
BJBrad JonesCDChase D McCannYRYanqin RenDADughan AhimovicEZElizabeth Zale+1 more →
PMID: 32027622PMCID: PMC7191002DOI103 citations
With Chase McCann · Immunology & Microbial Pathogenesis (PhD) · Class of 2020
Have Cells Harboring the HIV Reservoir Been Immunoedited?
Frontiers in immunology · 2019
BJBrad JonesCDChase D McCannTMTalia M MotaCWChao WangSMSteven M Lipkin
PMID: 31447850PMCID: PMC6691121DOI17 citations
With Chase McCann · Immunology & Microbial Pathogenesis (PhD) · Class of 2020

Postdoc mentee

Loss of Vpr-driven TRAIL-R2 expression protects HIV-infected cells from non-canonical NK cell TRAIL attack.
bioRxiv : the preprint server for biology · 2026
BJBrad Jones LNLouise Noelie Josephine Leyre
PMID: 42039429PMCID: PMC13104952DOI
With Louise Noelie Josephine Leyre · Immunology & Microbial Pathogenesis · Class of 2026
Dynamic Antigen Expression and Intrinsic CTL Resistance in HIV Reservoir Clones.
bioRxiv : the preprint server for biology · 2026
BJBrad Jones LNLouise Noelie Josephine Leyre IFIsabella FerreiraAHAlberto HerreraNBNathan Board+7 more →
PMID: 41809016PMCID: PMC12970335DOI
With Louise Noelie Josephine Leyre · Immunology & Microbial Pathogenesis · Class of 2026
Dynamic Antigen Expression and Intrinsic CTL Resistance in HIV Reservoir Clones.
bioRxiv : the preprint server for biology · 2026
BJBrad Jones IFIsabella FerreiraAHAlberto HerreraNBNathan BoardNLNoemi Linden+7 more →
PMID: 41809016PMCID: PMC12970335DOI
With Isabella Ferreira · Postdoc mentee
Dynamic Antigen Expression and Intrinsic CTL Resistance in HIV Reservoir Clones.
bioRxiv : the preprint server for biology · 2026
BJBrad Jones NBNathan Board IFIsabella FerreiraAHAlberto HerreraNLNoemi Linden+7 more →
PMID: 41809016PMCID: PMC12970335DOI
With Nathan Board · Postdoc mentee
Dynamic antigen expression and cytotoxic T cell resistance in HIV reservoir clones.
Nature · 2026
BJBrad Jones LNLouise Noelie Josephine Leyre IFIsabella FerreiraAHAlberto HerreraNLNoemi Linden+14 more →
PMID: 41735521PMCID: PMC13190302DOI3 citations
With Louise Noelie Josephine Leyre · Immunology & Microbial Pathogenesis · Class of 2026
Dynamic antigen expression and cytotoxic T cell resistance in HIV reservoir clones.
Nature · 2026
BJBrad Jones IFIsabella FerreiraAHAlberto HerreraNLNoemi LindenCOCristian Ovies+14 more →
PMID: 41735521PMCID: PMC13190302DOI3 citations
With Isabella Ferreira · Postdoc mentee
Dynamic antigen expression and cytotoxic T cell resistance in HIV reservoir clones.
Nature · 2026
BJBrad Jones NBNathan Board IFIsabella FerreiraAHAlberto HerreraNLNoemi Linden+14 more →
PMID: 41735521PMCID: PMC13190302DOI3 citations
With Nathan Board · Postdoc mentee
Q4ddPCR: a flexible, 4-target assay for high-resolution HIV reservoir profiling.
Nature communications · 2026
BJBrad Jones LNLouise Noelie Josephine LeyreGGGregory Gladkov
PMID: 41720775PMCID: PMC13035820DOI2 citations
With Louise Noelie Josephine Leyre · Immunology & Microbial Pathogenesis · Class of 2026
PRISM-Seq: An Ultra-sensitive Sequencing Approach For Mapping Lentiviral Integration Sites.
bioRxiv : the preprint server for biology · 2026
BJBrad Jones NBNathan BoardMNMichel NussenzweigGQGuinevere Q. Lee
PMID: 41509385PMCID: PMC12776086DOI
With Nathan Board · Postdoc mentee
HIV Nef amplifies mechanical heterogeneity to promote immune evasion.
bioRxiv : the preprint server for biology · 2025
BJBrad Jones LNLouise Noelie Josephine LeyreAHAlberto HerreraELEsther LeePZPaul Zumbo+3 more →
PMID: 41509268PMCID: PMC12776059DOI
With Louise Noelie Josephine Leyre · Immunology & Microbial Pathogenesis · Class of 2026
Transcription of HIV-1 is heterogenous among authentic latent CD4+ T cell clones.
The Journal of experimental medicine · 2025
BJBrad Jones IFIsabella FerreiraNLNoemi LindenMCMarina CaskeyMCMichel C Nussenzweig
PMID: 41474972PMCID: PMC13335129DOI4 citations
With Isabella Ferreira · Postdoc mentee
Correction: Transcription of HIV-1 at sites of intact latent provirus integration.
The Journal of experimental medicine · 2025
BJBrad Jones IFIsabella FerreiraNLNoemi Linden
PMID: 40408268PMCID: PMC12101529DOI
With Isabella Ferreira · Postdoc mentee
EZH2 inhibition mitigates HIV immune evasion, reduces reservoir formation, and promotes skewing of CD8⁺ T cells toward less-exhausted phenotypes.
Cell reports · 2025
BJBrad Jones LNLouise Noelie Josephine Leyre AGAndrea GramaticaIMItzayana MillerPZPaul Zumbo+7 more →
PMID: 40333189PMCID: PMC13088201DOI13 citations
With Louise Noelie Josephine Leyre · Immunology & Microbial Pathogenesis · Class of 2026
EZH2 inhibition mitigates HIV immune evasion, reduces reservoir formation, and promotes skewing of CD8⁺ T cells toward less-exhausted phenotypes.
Cell reports · 2025
BJBrad Jones NBNathan Board AGAndrea GramaticaIMItzayana MillerPZPaul Zumbo+7 more →
PMID: 40333189PMCID: PMC13088201DOI13 citations
With Nathan Board · Postdoc mentee
Multi-Omic Atlas reveals cytotoxic phenotype and ROS-linked metabolic quiescence as key features of CTL-resistant HIV-infected CD4 ⁺ T-cells.
bioRxiv : the preprint server for biology · 2024
BJBrad Jones LNLouise Noelie Josephine LeyreAHAlberto HerreraNLNoemi LindenDBDoron Betel
PMID: 39763858PMCID: PMC11702756DOI
With Louise Noelie Josephine Leyre · Immunology & Microbial Pathogenesis · Class of 2026
Transcription of HIV-1 at sites of intact latent provirus integration.
The Journal of experimental medicine · 2024
BJBrad Jones IFIsabella FerreiraNLNoemi LindenMCMarina CaskeyMCMichel C Nussenzweig
PMID: 39141127PMCID: PMC11323366DOI14 citations
With Isabella Ferreira · Postdoc mentee
Transcription of HIV-1 at sites of intact latent provirus integration.
bioRxiv : the preprint server for biology · 2024
BJBrad Jones IFIsabella FerreiraNLNoemi LindenMCMichel C Nussenzweig
PMID: 38746186PMCID: PMC11092494DOI
With Isabella Ferreira · Postdoc mentee
Epigenetic memory of coronavirus infection in innate immune cells and their progenitors.
Cell · 2023
BJBrad Jones LNLouise Noelie Josephine LeyreJCJin-Gyu CheongCPChristopher Parkhurst+23 more →SZSteven Zvi Josefowicz
PMID: 37597510PMCID: PMC10638861DOI243 citations
With Louise Noelie Josephine Leyre · Immunology & Microbial Pathogenesis · Class of 2026
SARS CoV-2 mRNA vaccination exposes latent HIV to Nef-specific CD8⁺ T-cells.
Nature communications · 2022
BJBrad Jones LNLouise Noelie Josephine Leyre ADAli Danesh GEGrant Ellsworth CJCarrie Johnston+5 more →
PMID: 35985993PMCID: PMC9389512DOI30 citations
With Louise Noelie Josephine Leyre · Immunology & Microbial Pathogenesis · Class of 2026
Hide and seek: for HIV-infected CD4+ T cells, playing well comes with maturity.
The Journal of clinical investigation · 2022
BJBrad Jones LNLouise Noelie Josephine Leyre
PMID: 35362485PMCID: PMC8976498DOI
With Louise Noelie Josephine Leyre · Immunology & Microbial Pathogenesis · Class of 2026
Selective BCL-X_L Antagonists Eliminate Infected Cells from a Primary-Cell Model of HIV Latency but Not from Ex Vivo Reservoirs.
Journal of virology · 2021
BJBrad Jones LNLouise Noelie Josephine LeyreYRYanqin RenTKThais KlevornTMTalia M Mota+2 more →
PMID: 33980597PMCID: PMC8274617DOI13 citations
With Louise Noelie Josephine Leyre · Immunology & Microbial Pathogenesis · Class of 2026
Integrated Assessment of Viral Transcription, Antigen Presentation, and CD8⁺ T Cell Function Reveals Multiple Limitations of Class I-Selective Histone Deacetylase Inhibitors during HIV-1 Latency Reversal.
Journal of virology · 2020
BJBrad Jones LNLouise Noelie Josephine LeyreTMTalia M MotaCDChase D McCannADAli Danesh+1 more →
PMID: 32051267PMCID: PMC7163115DOI23 citations
With Louise Noelie Josephine Leyre · Immunology & Microbial Pathogenesis · Class of 2026