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Scholars/Jan Krumsiek, PhD/Co-authored with mentees

Co-authored publications with mentees

Jan Krumsiek, PhD · 23 publications across 4 mentees

PhD mentee

Temporal and spatial control of phosphatidylinositides using optogenetics ameliorates behavioral deficits in an Alzheimer's disease mouse model.
Communications biology · 2026
JKJan KrumsiekNBNicholas BarteloAPAna Paula CostaKMKrista M Wartchow+1 more →LBLaura Beth J McIntire
PMID: 42448968DOI
With Nicholas Bartelo · Physiology, Biophysics & Systems Biology (PhD)
Untargeted metabolomics reveals organism specific biomarkers of carbapenem resistance in Klebsiella pneumoniae and Escherichia coli.
NPJ systems biology and applications · 2026
JKJan KrumsiekNBNicholas BarteloYLYaxin LiVSVijay Soni+4 more →ZZZhen Zhao
PMID: 42191701PMCID: PMC13490478DOI
With Nicholas Bartelo · Physiology, Biophysics & Systems Biology (PhD)
Metabolomics of Right Ventricular Function in Pulmonary Hypertension.
Circulation research · 2026
JKJan KrumsiekJCJonathan Chacon-BarahonaSCSamuel Chung ACAlexandra Christin Racanelli EMEvelyn M. Horn
PMID: 41983297PMCID: PMC13240081DOI3 citations
With Jonathan Chacon-Barahona · Tri-I Program in Computational Biology & Medicine (PhD)
The Spatial Atlas of Human Anatomy (SAHA): A Multimodal Subcellular-Resolution Reference Across Human Organs.
bioRxiv : the preprint server for biology · 2025
JKJan KrumsiekNBNicholas BarteloJPJiwoon Park EPErika Patel+14 more →CEChristopher E Mason
PMID: 40611896PMCID: PMC12224548DOI
With Nicholas Bartelo · Physiology, Biophysics & Systems Biology (PhD)
Urine-based multi-omic comparative analysis of COVID-19 and bacterial sepsis-induced ARDS.
medRxiv : the preprint server for health sciences · 2022
JKJan KrumsiekMBMustafa BuyukozkanOMOleh M. Akchurin EPEdwin Patino KSKarsten Suhre+5 more →
PMID: 35982662PMCID: PMC9387152DOI12 citations
With Mustafa Buyukozkan · Physiology, Biophysics & Systems Biology (PhD) · Class of 2022
Multi-omic comparative analysis of COVID-19 and bacterial sepsis-induced ARDS.
medRxiv : the preprint server for health sciences · 2022
JKJan KrumsiekMBMustafa BuyukozkanWWWilliam WhalenJHJohn HarringtonMEMary E Choi+5 more →
PMID: 35982655PMCID: PMC9387161DOI1,088 citations
With Mustafa Buyukozkan · Physiology, Biophysics & Systems Biology (PhD) · Class of 2022
Integrative metabolomic and proteomic signatures define clinical outcomes in severe COVID-19.
iScience · 2022
JKJan KrumsiekMBMustafa BuyukozkanACAlexandra Christin Racanelli FSFrank SchmidtLGLuis Gomez-Escobar+9 more →
PMID: 35756895PMCID: PMC9212983DOI15 citations
With Mustafa Buyukozkan · Physiology, Biophysics & Systems Biology (PhD) · Class of 2022
Angiopoietin 2 Is Associated with Vascular Necroptosis Induction in Coronavirus Disease 2019 Acute Respiratory Distress Syndrome.
The American journal of pathology · 2022
JKJan KrumsiekMBMustafa BüyüközkanDPDavid PriceLGLuis Gomez-Escobar+12 more →SRShahin Rafii
PMID: 35469796PMCID: PMC9027298DOI25 citations
With Mustafa Buyukozkan · Physiology, Biophysics & Systems Biology (PhD) · Class of 2022
maplet: an extensible R toolbox for modular and reproducible metabolomics pipelines.
Bioinformatics (Oxford, England) · 2022
JKJan KrumsiekMBMustafa BuyukozkanEBElisa BenedettiASAnnalise SchweickartRBRicha Batra+1 more →
PMID: 34694386PMCID: PMC8796365DOI22 citations
With Mustafa Buyukozkan · Physiology, Biophysics & Systems Biology (PhD) · Class of 2022
SGI: automatic clinical subgroup identification in omics datasets.
Bioinformatics (Oxford, England) · 2022
JKJan KrumsiekMBMustafa BuyukozkanKSKarsten Suhre
PMID: 34529048PMCID: PMC8723155DOI2 citations
With Mustafa Buyukozkan · Physiology, Biophysics & Systems Biology (PhD) · Class of 2022
Association of circulating cell-free double-stranded DNA and metabolic derangements in idiopathic pulmonary fibrosis.
Thorax · 2021
JKJan KrumsiekMBMustafa BuyukozkanWWWilliam WhalenFJFernando J Martinez+2 more →SJSoo Jung Cho
PMID: 34521729PMCID: PMC8758529DOI16 citations
With Mustafa Buyukozkan · Physiology, Biophysics & Systems Biology (PhD) · Class of 2022
Comparison of genetic risk prediction models to improve prediction of coronary heart disease in two large cohorts of the MONICA/KORA study.
Genetic epidemiology · 2021
JKJan KrumsiekMBMustafa Büyüközkan
PMID: 34082474DOI7 citations
With Mustafa Buyukozkan · Physiology, Biophysics & Systems Biology (PhD) · Class of 2022
Exogenous and Endogenous Sources of Serine Contribute to Colon Cancer Metabolism, Growth, and Resistance to 5-Fluorouracil.
Cancer research · 2021
JKJan KrumsiekMBMustafa BuyukozkanXKXi Kathy Zhou OEOlivier Elemento+5 more →AJAndrew J Dannenberg
PMID: 33526512PMCID: PMC8137552DOI108 citations
With Mustafa Buyukozkan · Physiology, Biophysics & Systems Biology (PhD) · Class of 2022
A Panel of 6 Biomarkers Significantly Improves the Prediction of Type 2 Diabetes in the MONICA/KORA Study Population.
The Journal of clinical endocrinology and metabolism · 2021
JKJan KrumsiekMBMustafa Büyüközkan
PMID: 33382400PMCID: PMC7993565DOI20 citations
With Mustafa Buyukozkan · Physiology, Biophysics & Systems Biology (PhD) · Class of 2022
A strategy to incorporate prior knowledge into correlation network cutoff selection.
Nature communications · 2020
JKJan KrumsiekMBMustafa BüyüközkanEBElisa BenedettiHAHassen Al-Amin KSKarsten Suhre
PMID: 33056991PMCID: PMC7560866DOI25 citations
With Mustafa Buyukozkan · Physiology, Biophysics & Systems Biology (PhD) · Class of 2022
A multi-source data integration approach reveals novel associations between metabolites and renal outcomes in the German Chronic Kidney Disease study.
Scientific reports · 2019
JKJan KrumsiekMBMustafa Büyüközkan
PMID: 31562371PMCID: PMC6764972DOI19 citations
With Mustafa Buyukozkan · Physiology, Biophysics & Systems Biology (PhD) · Class of 2022

Postdoc mentee

Consuming a modified Mediterranean ketogenic diet reverses the peripheral lipid signature of Alzheimer's disease in humans.
Communications medicine · 2025
JKJan KrumsiekASAnnalise Schweickart
PMID: 39779882PMCID: PMC11711287DOI9 citations
With Annalise Schweickart · Tri-I Program in Computational Biology & Medicine · Class of 2024
AutoFocus: a hierarchical framework to explore multi-omic disease associations spanning multiple scales of biomolecular interaction.
Communications biology · 2024
JKJan KrumsiekASAnnalise SchweickartRBRicha BatraKSKarsten Suhre AMAnna Maria Halama
PMID: 39237774PMCID: PMC11377741DOI1 citations
With Annalise Schweickart · Tri-I Program in Computational Biology & Medicine · Class of 2024
Serum and CSF metabolomics analysis shows Mediterranean Ketogenic Diet mitigates risk factors of Alzheimer's disease.
npj metabolic health and disease · 2024
JKJan KrumsiekASAnnalise Schweickart
PMID: 38962750PMCID: PMC11216994DOI22 citations
With Annalise Schweickart · Tri-I Program in Computational Biology & Medicine · Class of 2024
Secretome profiling reveals acute changes in oxidative stress, brain homeostasis, and coagulation following short-duration spaceflight.
Nature communications · 2024
JKJan KrumsiekASAnnalise SchweickartNHNadia HouerbiJKJangKeun Kim+10 more →CEChristopher E Mason
PMID: 38862464PMCID: PMC11166969DOI36 citations
With Annalise Schweickart · Tri-I Program in Computational Biology & Medicine · Class of 2024
The Space Omics and Medical Atlas (SOMA) and international astronaut biobank.
Nature · 2024
JKJan KrumsiekASAnnalise SchweickartEOEliah Overbey JKJangKeun Kim+25 more →CEChristopher E Mason
PMID: 38862028PMCID: PMC11357981DOI104 citations
With Annalise Schweickart · Tri-I Program in Computational Biology & Medicine · Class of 2024
A Modified Mediterranean Ketogenic Diet mitigates modifiable risk factors of Alzheimer's Disease: a serum and CSF-based metabolic analysis.
medRxiv : the preprint server for health sciences · 2023
JKJan KrumsiekASAnnalise Schweickart
PMID: 38076824PMCID: PMC10705656DOI
With Annalise Schweickart · Tri-I Program in Computational Biology & Medicine · Class of 2024
Variational autoencoders learn transferrable representations of metabolomics data.
Communications biology · 2022
JKJan KrumsiekASAnnalise SchweickartLCLeandro CerchiettiHAHassen Al-Amin KSKarsten Suhre
PMID: 35773471PMCID: PMC9246987DOI47 citations
With Annalise Schweickart · Tri-I Program in Computational Biology & Medicine · Class of 2024
maplet: an extensible R toolbox for modular and reproducible metabolomics pipelines.
Bioinformatics (Oxford, England) · 2022
JKJan KrumsiekASAnnalise SchweickartEBElisa BenedettiRBRicha BatraMBMustafa Buyukozkan+1 more →
PMID: 34694386PMCID: PMC8796365DOI22 citations
With Annalise Schweickart · Tri-I Program in Computational Biology & Medicine · Class of 2024