Co-authored publications with mentees

Fei Wang, PhD · 31 publications across 13 mentees

CSV Word

PhD mentee

Automated multi-scale computational pathotyping (AMSCP) of inflamed synovial tissue.
Nature communications · 2024
FWFei WangMBMatthew BrendelRBRichard Bell MOMiguel Otero MAMark Alan Fontana+5 more →
PMID: 39209814PMCID: PMC11362542DOI10 citations
With Matthew Brendel · Physiology, Biophysics & Systems Biology (PhD) · Class of 2023
Identification of Parkinson's disease PACE subtypes and repurposing treatments through integrative analyses of multimodal data.
NPJ digital medicine · 2024
FWFei WangHZHaotan ZhangCSChang Su HLHaoyang LiCHClaire Henchcliffe
PMID: 38982243PMCID: PMC11233682DOI40 citations
With Haotan Zhang · Physiology, Biophysics & Systems Biology (PhD)
Synovial fibroblast gene expression is associated with sensory nerve growth and pain in rheumatoid arthritis.
Science translational medicine · 2024
FWFei WangHZHaotan ZhangNBNicholas BarteloEFEdward Frederick DiCarlo+2 more →DEDana E Orange
PMID: 38598614PMCID: PMC11931728DOI60 citations
With Haotan Zhang · Physiology, Biophysics & Systems Biology (PhD)
Predicting clinical outcomes in the S1314-COXEN trial using a multimodal deep learning model integrating histopathology, cell types, and gene expression
Journal of Clinical Oncology · 2024
Source: ScopusDOI
With Matthew Brendel · Physiology, Biophysics & Systems Biology (PhD) · Class of 2023
Biomedical discovery through the integrative biomedical knowledge hub (iBKH).
iScience · 2023
FWFei WangHZHaotan ZhangCSChang SuSRSuraj RajendranZBZilong Bai+3 more →
PMID: 37020958PMCID: PMC10068563DOI25 citations
With Haotan Zhang · Physiology, Biophysics & Systems Biology (PhD)
Biomedical discovery through the integrative biomedical knowledge hub (iBKH).
iScience · 2023
FWFei WangGGGregory GhahramaniCSChang SuSRSuraj RajendranHZHaotan Zhang+3 more →
PMID: 37020958PMCID: PMC10068563DOI25 citations
With Gregory Ghahramani · Physiology, Biophysics & Systems Biology (PhD)
Application of Deep Learning on Single-cell RNA Sequencing Data Analysis: A Review.
Genomics, proteomics & bioinformatics · 2022
FWFei WangMBMatthew BrendelCSChang Su ZBZilong Bai OEOlivier Elemento
PMID: 36528240PMCID: PMC10025684DOI90 citations
With Matthew Brendel · Physiology, Biophysics & Systems Biology (PhD) · Class of 2023
Machine learning models for identifying predictors of clinical outcomes with first-line immune checkpoint inhibitor therapy in advanced non-small cell lung cancer.
Scientific reports · 2022
FWFei WangMBMatthew Brendel
PMID: 36271096PMCID: PMC9586943DOI10 citations
With Matthew Brendel · Physiology, Biophysics & Systems Biology (PhD) · Class of 2023
Multi-task deep learning-based survival analysis on the prognosis of late AMD using the longitudinal data in AREDS.
AMIA ... Annual Symposium proceedings. AMIA Symposium · 2022
FWFei WangMBMatthew BrendelGGGregory GhahramaniMLMingquan LinYPYifan Peng
PMID: 35308963PMCID: PMC88616656 citations
With Matthew Brendel · Physiology, Biophysics & Systems Biology (PhD) · Class of 2023
Multi-task deep learning-based survival analysis on the prognosis of late AMD using the longitudinal data in AREDS.
AMIA ... Annual Symposium proceedings. AMIA Symposium · 2022
FWFei WangGGGregory GhahramaniMBMatthew BrendelMLMingquan LinYPYifan Peng
PMID: 35308963PMCID: PMC88616656 citations
With Gregory Ghahramani · Physiology, Biophysics & Systems Biology (PhD)
Computational pathology for musculoskeletal conditions using machine learning: advances, trends, and challenges.
Arthritis research & therapy · 2022
FWFei WangMBMatthew BrendelMAMark Alan Fontana MOMiguel Otero+1 more →RBRichard Bell
PMID: 35277196PMCID: PMC8915507DOI20 citations
With Matthew Brendel · Physiology, Biophysics & Systems Biology (PhD) · Class of 2023
AD-linked R47H-TREM2 mutation induces disease-enhancing microglial states via AKT hyperactivation.
Science translational medicine · 2021
FWFei WangMBMatthew BrendelLFLi FanGKGillian K Carling+4 more →LGLi Gan
PMID: 34851693PMCID: PMC9345574DOI110 citations
With Matthew Brendel · Physiology, Biophysics & Systems Biology (PhD) · Class of 2023
Comprehensive subtyping of Parkinson's disease patients with similarity fusion: a case study with BioFIND data.
NPJ Parkinson's disease · 2021
FWFei WangMBMatthew BrendelCSChang SuYHYu HouCHClaire Henchcliffe
PMID: 34535682PMCID: PMC8448859DOI14 citations
With Matthew Brendel · Physiology, Biophysics & Systems Biology (PhD) · Class of 2023

Postdoc mentee

Discovering repurposable drugs for Alzheimer's disease and related dementias: target trial emulation using decentralised real-world data.
EBioMedicine · 2026
FWFei Wang HLHaoyang Li ZXZhenxing Xu
PMID: 42697072PMCID: PMC13572180DOI
With Haoyang Li · Postdoc mentee
SSRI/SNRI and long COVID in children and adolescents with neuropsychiatric conditions: a cohort study from the RECOVER Initiative.
Nature. Mental health · 2026
FWFei Wang HLHaoyang Li CZChengxi Zang RKRainu Kaushal
PMID: 42564177PMCID: PMC13442008DOI
With Haoyang Li · Postdoc mentee
Early Prediction of Parkinson's Disease Progression by Integrating Research Cohort and Real-World Data Using Knowledge-Anchored Graph Learning.
medRxiv : the preprint server for health sciences · 2026
FWFei Wang HLHaoyang Li ZYZuoyu Yan ZHZhe HuangWWWei-Ting Wang+4 more →
PMID: 42465923PMCID: PMC13370551DOI
With Haoyang Li · Postdoc mentee
Early Prediction of Parkinson's Disease Progression by Integrating Research Cohort and Real-World Data Using Knowledge-Anchored Graph Learning.
medRxiv : the preprint server for health sciences · 2026
FWFei Wang ZHZhe Huang ZYZuoyu Yan HLHaoyang LiWWWei-Ting Wang+4 more →
PMID: 42465923PMCID: PMC13370551DOI
With Zhe Huang · Postdoc mentee
Early Prediction of Parkinson's Disease Progression by Integrating Research Cohort and Real-World Data Using Knowledge-Anchored Graph Learning.
medRxiv : the preprint server for health sciences · 2026
FWFei Wang ZYZuoyu Yan HLHaoyang Li ZHZhe HuangWWWei-Ting Wang+4 more →
PMID: 42465923PMCID: PMC13370551DOI
With Zuoyu Yan · Postdoc mentee
Empowering clinical trial design with agentic intelligence and real-world data.
Nature communications · 2026
FWFei Wang HLHaoyang LiSRSuraj RajendranCZChengxi Zang
PMID: 42414290PMCID: PMC13341881DOI
With Haoyang Li · Postdoc mentee
Machine Learning for Dynamic and Short-Term Prediction of Preeclampsia Using Routine Clinical Data.
JAMA network open · 2026
FWFei Wang HLHaoyang LiYLYaxin LiCZChengxi Zang HSHe Sarina Yang+2 more →
PMID: 41790468PMCID: PMC12966928DOI3 citations
With Haoyang Li · Postdoc mentee
Multimodal multi-instance learning for cardiopulmonary exercise testing performance prediction.
NPJ digital medicine · 2026
FWFei Wang ZHZhe Huang DMDavid Majure DEDeborah Estrin
PMID: 41776301PMCID: PMC13066164DOI
With Zhe Huang · Postdoc mentee
COLA-GLM: collaborative one-shot and lossless algorithms of generalized linear models for decentralized observational healthcare data.
NPJ digital medicine · 2025
FWFei Wang HLHaoyang Li
PMID: 40664765PMCID: PMC12263967DOI3 citations
With Haoyang Li · Postdoc mentee
Federated target trial emulation using distributed observational data for treatment effect estimation.
NPJ digital medicine · 2025
FWFei Wang HLHaoyang Li CZChengxi Zang WPWeishen PanSRSuraj Rajendran
PMID: 40593099PMCID: PMC12214564DOI18 citations
With Haoyang Li · Postdoc mentee
Federated Target Trial Emulation using Distributed Observational Data for Treatment Effect Estimation.
medRxiv : the preprint server for health sciences · 2025
FWFei Wang HLHaoyang Li CZChengxi Zang WPWeishen PanSRSuraj Rajendran
PMID: 40385404PMCID: PMC12083601DOI
With Haoyang Li · Postdoc mentee
Identification of predictive subphenotypes for clinical outcomes using real world data and machine learning.
Nature communications · 2025
FWFei Wang QZQiannan Zhang WPWeishen Pan
PMID: 40355420PMCID: PMC12069721DOI7 citations
With Qiannan Zhang · Postdoc mentee
Long COVID after SARS-CoV-2 during pregnancy in the United States.
Nature communications · 2025
FWFei Wang HLHaoyang Li CZChengxi Zang ZXZhenxing Xu RKRainu Kaushal+2 more →
PMID: 40169569PMCID: PMC11961632DOI9 citations
With Haoyang Li · Postdoc mentee
Accuracy and transportability of machine learning models for adolescent suicide prediction with longitudinal clinical records.
Translational psychiatry · 2024
FWFei WangDLDaoming LyuCZChengxi Zang
PMID: 39085206PMCID: PMC11291985DOI16 citations
With Daoming Lyu · Postdoc mentee
Identification of Parkinson's disease PACE subtypes and repurposing treatments through integrative analyses of multimodal data.
NPJ digital medicine · 2024
FWFei Wang HLHaoyang Li CSChang SuHZHaotan ZhangCHClaire Henchcliffe
PMID: 38982243PMCID: PMC11233682DOI40 citations
With Haoyang Li · Postdoc mentee
Real-World Effectiveness of Nirmatrelvir in Protecting Long COVID for Outpatient Adult Patients - A Large-Scale Observational Cohort Study from the RECOVER Initiative.
Research square · 2024
FWFei Wang HLHaoyang Li CZChengxi Zang DKDhruv Khullar+3 more →RKRainu Kaushal
PMID: 38947026PMCID: PMC11213188DOI
With Haoyang Li · Postdoc mentee
Language model and its interpretability in biomedicine: A scoping review.
iScience · 2024
FWFei WangXWXingbo WangDLDaoming Lyu
PMID: 38495823PMCID: PMC10940999DOI16 citations
With Xingbo Wang · Postdoc mentee
Language model and its interpretability in biomedicine: A scoping review.
iScience · 2024
FWFei WangDLDaoming LyuXWXingbo Wang
PMID: 38495823PMCID: PMC10940999DOI16 citations
With Daoming Lyu · Postdoc mentee
Large Language Models in Health Care: Charting a Path Toward Accurate, Explainable, and Secure AI.
Journal of general internal medicine · 2024
FWFei WangXWXingbo WangDKDhruv Khullar
PMID: 38308153PMCID: PMC11116282DOI12 citations
With Xingbo Wang · Postdoc mentee
Faithful AI in Medicine: A Systematic Review with Large Language Models and Beyond.
medRxiv : the preprint server for health sciences · 2023
FWFei WangQXQianqian XieEJEdward J. Schenck HSHe Sarina Yang YPYifan Peng
PMID: 37398329PMCID: PMC10312867DOI
With Qianqian Xie · Postdoc mentee
Sepsis subphenotyping based on organ dysfunction trajectory.
Critical care (London, England) · 2022
FWFei WangHZHao ZhangCSChang Su ISIlias Siempos LKLisa K Torres+2 more →
PMID: 35786445PMCID: PMC9250715DOI86 citations
With Hao Zhang · Postdoc mentee
Comprehensive subtyping of Parkinson's disease patients with similarity fusion: a case study with BioFIND data.
NPJ Parkinson's disease · 2021
FWFei WangYHYu HouMBMatthew BrendelCSChang SuCHClaire Henchcliffe
PMID: 34535682PMCID: PMC8448859DOI14 citations
With Yu Hou · Postdoc mentee
Comparison of the Parkinson's KinetiGraph to off/on levodopa response testing: Single center experience.
Clinical neurology and neurosurgery · 2021
FWFei WangYHYu HouIGIvan GuanAMAshwin Malhotra+1 more →CHClaire Henchcliffe
PMID: 34455169DOI10 citations
With Yu Hou · Postdoc mentee
Online Learning in Variable Feature Spaces with Mixed Data
Proceedings IEEE International Conference on Data Mining Icdm · 2021
Source: ScopusDOI
With Bojian Hou · Postdoc mentee
Routine Laboratory Blood Tests Predict SARS-CoV-2 Infection Using Machine Learning.
Clinical chemistry · 2020
FWFei WangYHYu HouHSHe Sarina YangLVLjiljana V VasovicPAPeter A D Steel+7 more →
PMID: 32821907PMCID: PMC7499540DOI95 citations
With Yu Hou · Postdoc mentee