Co-authored publications with mentees

Postdoc mentee

• Transcriptional signature of induced neurons differentiates virologically suppressed people with HIV from people without HIV.

  JCI insight · 2025

  DNDouglas NixonSMSamuel Martínez-MezaPNPhilipp N OstermannAHAlberto Herrera+2 more →THTeresa Hope Evering

  PMID: 41324907·PMCID: PMC12892921·DOI·Abstract

  With Samuel Martinez Meza · Postdoc mentee

• A Transcriptional Signature of Induced Neurons Differentiates Virologically Suppressed People Living With HIV from People Without HIV.

  bioRxiv : the preprint server for biology · 2024

  DNDouglas NixonSMSamuel Martínez-Meza

  PMID: 39484396·PMCID: PMC11526917·DOI·Abstract

  With Samuel Martinez Meza · Postdoc mentee

• Endogenous retroelement expression in the gut microenvironment of people living with HIV-1.

  EBioMedicine · 2024

  DNDouglas NixonNDNicholas DopkinsSMStephanie MichaelMLMatthew Lewis Bendall

  PMID: 38677181·PMCID: PMC11061259·DOI·9 citations·Abstract

  With Nicholas Dopkins · Postdoc mentee

• Ribosomal profiling of human endogenous retroviruses in healthy tissues.

  BMC genomics · 2024

  DNDouglas NixonNDNicholas DopkinsSMStephanie MichaelJLJez L MarstonNCNicholas Collins+1 more →

  PMID: 38166631·PMCID: PMC10759522·DOI·10 citations·Abstract

  With Nicholas Dopkins · Postdoc mentee

• A single-cell transposable element atlas of human cell identity.

  bioRxiv : the preprint server for biology · 2023

  DNDouglas NixonNDNicholas DopkinsJLJez L MarstonMLMatthew Lewis Bendall

  PMID: 38234829·PMCID: PMC10793444·DOI·Abstract

  With Nicholas Dopkins · Postdoc mentee

• The brain-liver cholinergic anti-inflammatory pathway and viral infections.

  Bioelectronic medicine · 2023

  DNDouglas NixonNDNicholas DopkinsSMSamuel Martínez-Meza

  PMID: 38115148·PMCID: PMC10731847·DOI·4 citations·Abstract

  With Nicholas Dopkins · Postdoc mentee

• The brain-liver cholinergic anti-inflammatory pathway and viral infections.

  Bioelectronic medicine · 2023

  DNDouglas NixonSMSamuel Martínez-MezaNDNicholas Dopkins

  PMID: 38115148·PMCID: PMC10731847·DOI·4 citations·Abstract

  With Samuel Martinez Meza · Postdoc mentee

• Retroelement-Age Clocks: Epigenetic Age Captured by Human Endogenous Retrovirus and LINE-1 DNA methylation states.

  bioRxiv : the preprint server for biology · 2023

  DNDouglas NixonNDNicholas DopkinsL(Lishomwa (Lish) NdhlovuMLMatthew Lewis Bendall+1 more →MJMichael J Corley

  PMID: 38106164·PMCID: PMC10723416·DOI·Abstract

  With Nicholas Dopkins · Postdoc mentee

• Activation of human endogenous retroviruses and its physiological consequences.

  Nature reviews. Molecular cell biology · 2023

  DNDouglas NixonNDNicholas Dopkins

  PMID: 37872387·DOI·98 citations·Abstract

  With Nicholas Dopkins · Postdoc mentee

• Locus specific human endogenous retroviruses reveal new lymphoma subtypes.

  bioRxiv : the preprint server for biology · 2023

  DNDouglas NixonNDNicholas DopkinsJLJez L MarstonSMStephanie Michael+4 more →MLMatthew Lewis Bendall

  PMID: 37333202·PMCID: PMC10274920·DOI·3,884 citations·Abstract

  With Nicholas Dopkins · Postdoc mentee

• Endogenous Reverse Transcriptase Inhibition Attenuates TLR5-Mediated Inflammation.

  mBio · 2023

  DNDouglas NixonNDNicholas DopkinsSMStephanie MichaelJLJez L MarstonMLMatthew Lewis Bendall

  PMID: 36645307·PMCID: PMC9973353·DOI·8 citations·Abstract

  With Nicholas Dopkins · Postdoc mentee

• A field guide to endogenous retrovirus regulatory networks.

  Molecular cell · 2022

  DNDouglas NixonNDNicholas DopkinsMLMatthew Lewis Bendall

  PMID: 36270247·DOI·22 citations·Abstract

  With Nicholas Dopkins · Postdoc mentee

• Two-step recognition of HIV-1 DNA in the cytosol.

  Trends in microbiology · 2022

  DNDouglas NixonNDNicholas Dopkins

  PMID: 36153261·DOI·2 citations·Abstract

  With Nicholas Dopkins · Postdoc mentee

• How human endogenous retroviruses interact with the microbiota in health and disease.

  Trends in microbiology · 2022

  DNDouglas NixonNDNicholas DopkinsJLJez L MarstonMLMatthew Lewis Bendall

  PMID: 35672223·DOI·10 citations·Abstract

  With Nicholas Dopkins · Postdoc mentee