Co-authored publications with mentees

Ekta Khurana, PhD · 7 publications across 5 mentees

MD mentee

Chromatin profiles classify castration-resistant prostate cancers suggesting therapeutic targets.
Science (New York, N.Y.) · 2022
EKEkta KhuranaAPAnn PalladinoDXDuo XuAMAlexander Martinez-FundichelySBShaham Beg+8 more →
PMID: 35617398PMCID: PMC9299269DOI218 citations
With Ann Palladino · MD mentee · Class of 2023

cfOncoXpress: Tumor gene expression prediction from cell-free DNA whole-genome sequences.
bioRxiv : the preprint server for biology · 2025
PMID: 41278639PMCID: PMC12637447DOI
With Weiling Li · Research Associate in Systems and Computational Biomedicine

Lineage Reversion Drives WNT Independence in Intestinal Cancer.
Cancer discovery · 2020
EKEkta KhuranaFTFanying TangTHTeng HanMPMaria Paz Zafra+4 more →LELukas Edward Dow
PMID: 32546576PMCID: PMC7541594DOI64 citations
With Fanying Tang · Molecular Biology (PhD) · Class of 2021
MYBL1 rearrangements and MYB amplification in breast adenoid cystic carcinomas lacking the MYB-NFIB fusion gene.
The Journal of pathology · 2017
EKEkta KhuranaANAndre N ForbesLNLarry Norton
PMID: 29149504PMCID: PMC5839480DOI92 citations
With Andre Forbes · Physiology, Biophysics & Systems Biology (PhD) · Class of 2022
Identification of novel prostate cancer drivers using RegNetDriver: a framework for integration of genetic and epigenetic alterations with tissue-specific regulatory network.
Genome biology · 2017
EKEkta KhuranaANAndre Neil ForbesAMAlexander Martinez-FundichelyABAdeline BergerEMEric Minwei Liu+4 more →
PMID: 28750683PMCID: PMC5530464DOI28 citations
With Andre Forbes · Physiology, Biophysics & Systems Biology (PhD) · Class of 2022

Genomic alterations in the YAP/TAZ pathway are associated with stem cell-like castration-resistant prostate cancer.
medRxiv : the preprint server for health sciences · 2025
EKEkta KhuranaMLMarjorie L RoskesAMAlexander Martinez-FundichelyMAMajd Al AssaadBDBrian D. Robinson+7 more →
PMID: 40630580PMCID: PMC12236875DOI
With Marjorie Roskes · Tri-I Program in Computational Biology & Medicine · Class of 2025
BET inhibitors reduce tumor growth in preclinical models of gastrointestinal gene signature-positive castration-resistant prostate cancer.
The Journal of clinical investigation · 2025
EKEkta KhuranaMLMarjorie L RoskesPCPing Chi YCYu Chen
PMID: 40553565PMCID: PMC12352905DOI3 citations
With Marjorie Roskes · Tri-I Program in Computational Biology & Medicine · Class of 2025

Ekta Khurana, PhD · 7 publications across 5 mentees

Chromatin profiles classify castration-resistant prostate cancers suggesting therapeutic targets.
Science (New York, N.Y.) · 2022
EKEkta KhuranaAPAnn PalladinoDXDuo XuAMAlexander Martinez-FundichelySBShaham Beg+8 more →
PMID: 35617398PMCID: PMC9299269DOI218 citations
With Ann Palladino · MD mentee · Class of 2023

cfOncoXpress: Tumor gene expression prediction from cell-free DNA whole-genome sequences.
bioRxiv : the preprint server for biology · 2025
PMID: 41278639PMCID: PMC12637447DOI
With Weiling Li · Research Associate in Systems and Computational Biomedicine

Lineage Reversion Drives WNT Independence in Intestinal Cancer.
Cancer discovery · 2020
EKEkta KhuranaFTFanying TangTHTeng HanMPMaria Paz Zafra+4 more →LELukas Edward Dow
PMID: 32546576PMCID: PMC7541594DOI64 citations
With Fanying Tang · Molecular Biology (PhD) · Class of 2021
MYBL1 rearrangements and MYB amplification in breast adenoid cystic carcinomas lacking the MYB-NFIB fusion gene.
The Journal of pathology · 2017
EKEkta KhuranaANAndre N ForbesLNLarry Norton
PMID: 29149504PMCID: PMC5839480DOI92 citations
With Andre Forbes · Physiology, Biophysics & Systems Biology (PhD) · Class of 2022
Identification of novel prostate cancer drivers using RegNetDriver: a framework for integration of genetic and epigenetic alterations with tissue-specific regulatory network.
Genome biology · 2017
EKEkta KhuranaANAndre Neil ForbesAMAlexander Martinez-FundichelyABAdeline BergerEMEric Minwei Liu+4 more →
PMID: 28750683PMCID: PMC5530464DOI28 citations
With Andre Forbes · Physiology, Biophysics & Systems Biology (PhD) · Class of 2022

Genomic alterations in the YAP/TAZ pathway are associated with stem cell-like castration-resistant prostate cancer.
medRxiv : the preprint server for health sciences · 2025
EKEkta KhuranaMLMarjorie L RoskesAMAlexander Martinez-FundichelyMAMajd Al AssaadBDBrian D. Robinson+7 more →
PMID: 40630580PMCID: PMC12236875DOI
With Marjorie Roskes · Tri-I Program in Computational Biology & Medicine · Class of 2025
BET inhibitors reduce tumor growth in preclinical models of gastrointestinal gene signature-positive castration-resistant prostate cancer.
The Journal of clinical investigation · 2025
EKEkta KhuranaMLMarjorie L RoskesPCPing Chi YCYu Chen
PMID: 40553565PMCID: PMC12352905DOI3 citations
With Marjorie Roskes · Tri-I Program in Computational Biology & Medicine · Class of 2025